*********************************************************
*///////////////////////////////////////////////////////*
*               This is VisCHAINER version 1.0          *                    
*       	   Copyright by                         *
*							*
*                   Asem Othman                         *
*  			and				*
*		Mohamed I. Abouelhoda  (C) 2007         * 
*                                                       *
*       Unauthorized commercial usage and distribution  *
*              of this program is prohibited.           *
*             Contact the author for a license.         *
*           Please report bugs and suggestions to       *
*             <mibrahim@informatik.uni-ulm.de>          *
*///////////////////////////////////////////////////////*
*********************************************************

INTRODUCTION





DIRECTORY STRUCTURE

VisChainerSrc: containing source files.
demoTestData: containing test dataset.

The shell script for linux/unix is vischainer.sh
The shell script for linux/unix is vischainer.bat

Be SURE YOU ARE USING JAVA 1.6

For compiling:
javac -classpath ./VisChainerSrc/:./biojava-1.4.jar:./bytecode-0.92.jar:./looks-2.0.4.jar ./VisChainerSrc/VisChainerMain.java

For running:
java  -classpath ./VisChainerSrc:./biojava-1.4.jar:./bytecode-0.92.jar:./looks-2.0.4.jar -Xmx1024m VisChainer


The shell script vischainer.sh (vischainer.bat) calls this command. To change 
the amount of memory available for JVM change the number 1024 in the argument 
-Xmx1024m. 

